PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104781
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 540aa    MW: 60994.1 Da    PI: 8.5748
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  ++ ++G g W+tI +          R+  ++k++w++
       Achn104781  5 KQKWTPEEEEALRSGIVKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.012158IPR017930Myb domain
SuperFamilySSF466892.44E-15270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
SMARTSM007176.2E-7459IPR001005SANT/Myb domain
PfamPF002492.4E-8555IPR001005SANT/Myb domain
CDDcd116609.75E-18656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MGAPKQKWTP EEEEALRSGI VKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWDSREKAR LALKRMQPIF KQDENPMALS TVDMDEQLKD NASLISRIHQ LEHECDALHK  120
DIEQLCMQKA GPSYLSVATR MHFQSLQASS LLIMIDKKKG KKKKCDKAEK HVKFFQGCVA  180
AAFAERDHSI MEAGKAKEKE EVMSQKLSNF QRRNQDLKLY VLYWVQLIVF IFISVHIGWV  240
KQGGRATFDF LEEKKLTDAL QCDLEEQNKQ NETLKKVINK FFEIRQYSVN GVCESGSWED  300
KCECLLCDSH EMWDFNNQGK TSTPKYIGNG SGLPNSMAIA SDASEALAQA LQEKRVVLFV  360
VGMWAMACGG LSRKINHEIT QGNFLAEIVV KRIVQERDGR LRNLIKETYL KRWIGRVDSP  420
GNEVEGHLNY KGNKSSIYRM DIARMKIENA TLKESLESME HLTSAICRLT SEGDHSECLS  480
LLKVKESVTS GGTVTGALEA LDDIVGEAKL TRTALEAPFP SAGQLRQIPN CPVKVTTRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012093139.13e-83PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5
TrEMBLU5G6922e-55U5G692_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09030.15e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA768344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-45telomere repeat binding factor 1